SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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This family contains a protein with resolved 3D structure: SIRA_ECOLI/6-79, pdb ID: 1dcj. SDPsite predicts following important positions (numbering corresponds to 1dcj):

  • SDPs:

    45D, 43A, 51D, 38T, 75Y, 14A, 50R, 30V, 69D, 76L, 11T, 59M, 17L, 17L, 16G, 16G

  • CPs:

    19C, 20P

  • Best cluster:

    14A, 16G, 17L, 19C, 20P, 43A, 45D, 50R, 51D

  • Second best cluster:

    75Y, 76L

  • Mapping predictions onto structure of 1dcj:

  • Associated grouping:

    • Group 1

      • Y990_METJA/4-75
      • YEED_ECOLI/3-74
      • Y242_HAEIN/1-72
    • Group 2

      • SIRA_HAEIN/6-77
      • SIRA_ECOLI/6-79
      • YRKI_BACSU/3-74
      • YRKF_BACSU/4-75