SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: YIGZ_ECOLI/17-126, pdb ID: 1vi7. SDPsite predicts following important positions (numbering corresponds to 1vi7):

  • SDPs:

    120Y, 115G, 105Y, 119A, 116L, 85P, 114G, 62G

  • CPs:

    54H, 25F, 74D, 75D, 107G, 108G

  • Best cluster:

    114G, 115G, 116L, 119A, 120Y

  • Second best cluster:

    54H, 74D, 75D, 105Y, 107G, 108G

  • Mapping predictions onto structure of 1vi7:

  • Associated grouping:

    • Group 1

      • O51391_BORBU/15-122
      • Q9ZJD4_HELPJ/14-119
      • Q9ZNK1_CLOHI/16-123
      • YVYE_BACSU/18-125
      • Q9SZK9_ARATH/21-124
      • Y722_HAEIN/17-126
      • YIGZ_ECOLI/17-126
      • Q9RSC2_DEIRA/21-125
      • YPOL_THETH/2-103
    • Group 2

      • YCU9_YEAST/143-253
      • O13997_SCHPO/152-259
      • Q9XWF4_CAEEL/137-249
      • Q9W625_XENLA/178-288
      • O55091_MOUSE/180-290