SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: MESJ_ECOLI/14-215, pdb ID: 1ni5. SDPsite predicts following important positions (numbering corresponds to 1ni5):

  • SDPs:

    60W, 127A, 96A, 175I, 51H, 53L, 23L, 100A

  • CPs:

    154P, 115Q, 22G, 24D, 119D, 177D, 98Y, 180N, 21G, 97R, 51H, 94R, 153R, 191R

  • Best cluster:

    21G, 22G, 23L, 24D, 94R, 96A, 97R, 98Y, 115Q, 153R, 154P

  • Second best cluster:

    51H, 53L, 60W, 175I, 177D

  • Mapping predictions onto structure of 1ni5:

  • Associated grouping:

    • Group 1

      • O25428_HELPY/15-206
      • Q9PMK7_CAMJE/15-208
      • Q98PE3_MYCPU/1-198
      • Q9PR68_UREPA/19-220
      • Y084_MYCPN/5-202
      • Y084_MYCGE/6-203
    • Group 2

      • Y579_THEMA/7-209
      • Y1887_AQUAE/26-229
      • Q9KGH8_BACHD/20-226
      • YACA_BACSU/19-225
    • Group 3

      • Q9ZGE2_HELMO/23-225
      • Q9RV23_DEIRA/57-253
      • Y373_TREPA/30-239
    • Group 4

      • Y788_BORBU/25-228
      • YCF62_MESVI/23-224
      • YCF62_PORPU/26-227
    • Group 5

      • Q9JUE9_NEIMA/13-212
      • Q9KPX0_VIBCH/19-220
      • MESJ_ECOLI/14-215
      • Q9HXZ3_PSEAE/22-222
      • Q9PFJ8_XYLFA/16-216
      • MESJ_BUCAI/13-213
      • MESJ_HAEIN/18-221
      • Q9CNY2_PASMU/19-219
    • Group 6

      • Q98F87_RHILO/21-232
      • Q9XBG6_BRAJA/26-228
      • Q9LV47_ARATH/56-286
      • YDE8_SCHPO/24-245