SDPsite: prediction of protein active and specific recognition sites from sequence and structure

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##FAMILY##

This family contains a protein with resolved 3D structure: CSP_THEMA/1-65, pdb ID: 1g6p. SDPsite predicts following important positions (numbering corresponds to 1g6p):

  • SDPs:

    56G, 9D, 8F, 53G, 27V, 6K, 13G, 24D, 7W

  • CPs:

    29H, 7W, 15G, 16F, 3G

  • Best cluster:

    6K, 7W, 8F, 9D, 13G, 15G, 16F, 24D, 27V

  • Second best cluster:

    53G, 56G

  • Mapping predictions onto structure of 1g6p:

  • Associated grouping:

    • Group 1

      • CSPA_PSEAE/4-69
      • CAPB_PSESM/4-69
      • CSPF_STRCO/1-67
      • CSP7_STRCL/1-66
      • CSPA_STIAU/1-67
      • CSPD_ECOLI/1-67
      • CSPD_HAEIN/1-67
      • P91602_CAEVU/52-120
      • O65639_ARATH/10-77
      • CSPA_MICLU/1-67
      • Q27277_SCHMA/25-95
      • Q41188_ARATH/10-77
      • GRP2_NICSY/8-75
      • CSPA_MYCTU/1-67
      • CSP_ARTGO/1-67
      • CSPC_ECOLI/2-68
      • CSP_THEMA/1-65
      • CSP_AQUAE/2-68
      • O62213_CAEEL/20-90
      • YB3_XENLA/36-106
      • O46173_DROME/62-131
      • CSPC_BACCR/1-65
      • O33591_STAAU/1-66
      • O34279_YERPE/4-70
      • CSPB_ECOLI/4-70
      • CSPG_ECOLI/4-70
      • Q23960_DUGJA/28-98
      • P91398_CAEEL/63-134
      • CSPB_BACCE/1-65
      • CSPA_BACCE/2-67
      • CSPA_LISMO/1-66
      • O53883_MYCTU/1-61
      • CSP2_LACPL/1-66
      • O32772_9LACT/1-66
      • CSPH_ECOLI/4-70
      • CSPF_ECOLI/4-70
    • Group 2

      • UNR_RAT/673-738
      • UNR_RAT/25-90
      • UNR_HUMAN/185-248
      • UNR_RAT/518-582