RNASurfaceUtil: program to visualize structural significance values and heatmap


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DESCRIPTION
This program visualizes structural significance values and heatmap for a given segment. It is applied to output files of RNASurface program. The input directory must contain the following files: heatmap_binary.zip/heatmap_binary, heatmap_keys, output.txt, sign.txt (genes.bed is optional). The program output is PNG image visualizing structural significance values and heatmap for the segment with coordinates from..to, which are also specified in input.

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OPTIONS
path to directory containing files for analysis
start of segment of interest
end of segment of interest
output image (path+name) [optional]
user-defined start (from the genome) [optional]

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EXAMPLE OF RUN
java -jar RNASurfaceUtil.jar /home/results1/ 0 1200 /home/results1/test1.PNG 200