RNA kinetics server

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Sequence = GGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCUACCA

Final time = 3.0

Number of runs = 100

Chain's growth constant = 40.0

Nucleation constant = 1.0E8

Number of structure permutations = 1176291

All helices

#	sequence	energy	length	k_break	probability
1	8- gcuc -11 24- cgag -21	-7.9	4	1.07*103
2	13- ggug -16 29- ccac -26	-7.6	4	1.75*103
3	10- ucagg -14 34- agucc -30	-9.899	5	5.23*101
4	29- cccu -32 40- ggga -37	-8.7	4	2.93*102
5	26- caccc -30 42- guggg -38	-10.9	5	1.03*101
6	26- cacc -29 51- gugg -48	-7.6	4	1.75*103
7	0- ggcuug -5 60- cugaac -55	-9.1	6	2.3*102
8	49- gugg -52 63- cacc -60	-7.6	4	1.75*103
9	14- gugg -17 63- cacc -60	-7.6	4	1.75*103
10	38- gggug -42 65- cucac -61	-7.9	5	1.34*103
11	30- ccuga -34 68- ggacu -64	-9.9	5	5.23*101
12	0- ggcuug -5 70- ccggac -65	-11.499	6	4.67
13	43- agguc -47 71- uccgg -67	-9.4	5	1.17*102
14	13- ggugg -17 74- ccauc -70	-8.6	5	4.31*102
15	48- ggugg -52 74- ccauc -70	-8.6	5	4.31*102
16	15- uggu -18 75- acca -72	-7.6	4	1.75*103
17	50- uggu -53 75- acca -72	-7.6	4	1.75*103

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Helix probabilities

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All Structures

#	Structure	Time	Energy	Probability
1		1.12	-16.9
2		0.59	0
3		0.41	-2.999
4		0.22	-1.5
5		0.14	-6.5
6		0.11	-13.4
7		0.59*10-1	-14.7
8		0.57*10-1	-8.2
9		0.54*10-1	-6.6
10		0.54*10-1	-1.2
11		0.53*10-1	-12.5
12		0.37*10-1	-12.9
13		0.29*10-1	-8.7
14		0.1*10-1	-3.8
15		0.79*10-2	-4.6
16		0.74*10-2	-15.9
17		0.69*10-2	-11
18		0.31*10-2	-4.7
19		0.86*10-3	-6.3
20		0.17*10-3	-10.2
21		0.1*10-3	-10.8
22		0.48*10-4	-2
23		0.2*10-4	-8.9
24		0.14*10-4	-15
25		0.14*10-4	-10.3
26		0.11*10-4	-6.6
27		0.1*10-4	-2.3
28		0.83*10-5	-8.6
29		0.47*10-5	-9.9
30		0.46*10-5	-8.8
31		0.23*10-5	-2
32		0.75*10-6	-14
33		0.53*10-6	-6.35
34		0.14*10-7	-8.7
35		0.12*10-8	-14.4
36		0.55*10-9	-10.4
37		0.34*10-9	-14.6
38		0.17*10-9	-3.8
39		0.51*10-10	-10.8
40		0.48*10-10	-12.4
41		0.24*10-10	-10.799
42		0.19*10-10	-1.4
43		0.14*10-10	-12.6
44		0.12*10-10	-5
45		0.12*10-10	-10.4
46		0.8*10-11	-11.1
47		0.49*10-11	-6.7
48		0.45*10-11	-5.1
49		0.63*10-12	-3.1
50		0.5*10-12	-14.4
51		0.19*10-12	-0.5
52		0.17*10-12	-6.2
53		0.76*10-13	-3.2
54		0.71*10-13	-4.8
55		0.55*10-13	-6.9
56		0.55*10-13	-9.5
57		0.38*10-13	-9
58		0.12*10-13	-0.8
59		0.87*10-14	-9.3
60		0.67*10-14	-8.7
61		0.46*10-14	-10.9
62		0.29*10-14	-6.8
63		0.73*10-15	-1.7

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Structure probabilities